Scaffold Ga0310130_0000228

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000228
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46943
• Total Scaffold Genes: 122
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (63.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017818	Metagenome / Metatranscriptome	238	Y
F048267	Metagenome / Metatranscriptome	148	Y
F049575	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000228_30121_30363	F017818	AGAAGG	MNKDAYYDWIDENDTYPKHSHKWIVALYTPDGGRFDILHRYFGPFETKEEAKSFATNYKKTYTKPGFISSIKIYPLCEVL
Ga0310130_0000228_43730_43867	F048267	AGAAG	MTDEEWETALKSMNEHAKKWVDEEVFKIKYNIIKDLINKEYLKDD
Ga0310130_0000228_45577_45780	F049575	AGGAG	MTKLSAADLMVIHNTLYKSLNVVGNSIWTQETRERVMDKVSIIMEQMKAEVVCGDVEPIVVSGDLGE