Scaffold Ga0310130_0000193

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000193
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50595
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (74.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001464	Metagenome / Metatranscriptome	689	Y
F047645	Metagenome / Metatranscriptome	149	Y
F084138	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000193_10426_10944	F001464	GGA	MDDKQGYKPTRTMARANRKRQAKRFSYFFLNNKIHKVLSYSRAKDEIVAWCYPDKKRVLYSYSQVVKNMENAYSTKQVAQLLNKHKITIEDYILEGKIKYPQKVYPIGNTESSWYKFMYSESDIMDIHQFILESGYSKNMPSKTELRALLKHNTILYTKTTEGNFVPVWKAD
Ga0310130_0000193_24213_24383	F047645	AGAAG	VYEYVYSYICPDCGKDTHEPDRELDSKLFKEYYESGKHLQWICPVEGGTIRGWWSI
Ga0310130_0000193_38091_38303	F084138	GGA	MGNNMTVLEEIIKEVSASLYQKWYNALPENEKNSESSEAMAKNAGETTFFVIQLFMQKFNDAAEELKSID