NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000193

Scaffold Ga0310130_0000193


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000193 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50595
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (74.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001464Metagenome / Metatranscriptome689Y
F047645Metagenome / Metatranscriptome149Y
F084138Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000193_10426_10944F001464GGAMDDKQGYKPTRTMARANRKRQAKRFSYFFLNNKIHKVLSYSRAKDEIVAWCYPDKKRVLYSYSQVVKNMENAYSTKQVAQLLNKHKITIEDYILEGKIKYPQKVYPIGNTESSWYKFMYSESDIMDIHQFILESGYSKNMPSKTELRALLKHNTILYTKTTEGNFVPVWKAD
Ga0310130_0000193_24213_24383F047645AGAAGVYEYVYSYICPDCGKDTHEPDRELDSKLFKEYYESGKHLQWICPVEGGTIRGWWSI
Ga0310130_0000193_38091_38303F084138GGAMGNNMTVLEEIIKEVSASLYQKWYNALPENEKNSESSEAMAKNAGETTFFVIQLFMQKFNDAAEELKSID

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