Scaffold Ga0310127_031245

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_031245
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2979
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F013505	Metagenome / Metatranscriptome	270	Y
F091611	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_031245_1980_2201	F013505	N/A	MKHYPSYEARLEADRQTQHSGYGIQQYFCADGSRKWEAYGWERLSELSIHTTSYGIFDHKWQAEQFFNNIIHS
Ga0310127_031245_2583_2810	F091611	N/A	MPYSLIVDDEWGVPYALKTFETIQDVHDEIRTMDEALDNVGPGAAYAIRCIIDQLKEIVHEAEEEPETLPDRPAF
Ga0310127_031245_691_969	F005382	N/A	MTKTDKIKSFIFNAGGSIVNVRFVKADGSVRSLCFNPRDTKEIKGTGTSVKKPSIIRCRDFTIARTAGEGAWRSFDCERVLSIKANGQTLVF