Scaffold Ga0310127_023075

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_023075
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3734
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F025689	Metagenome	200	Y
F033776	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_023075_1882_2136	F033776	N/A	VADKLNDRRPKGKGRNFTVNIRMSQEEIEAARALGDGNISMGFRQAIRYACWKEMKPVKLSTMLRSAAVMAQTLEDASRSSSMP
Ga0310127_023075_2308_2460	F010762	AGGAGG	MDEATLKVAFDEWWRDSYGVPPGTHAVMTHTAFAAHILNLMELMQDDRPS
Ga0310127_023075_857_1096	F025689	N/A	MNPLVHTMEAQFHGAANASMLRQLHAAKDWNALLEYALLLAEQEASQRSQIQWLAAEAMRSCSIQDWHLAAAKDLAGRD