Scaffold Ga0310127_007536

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_007536
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8630
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_007536_3847_4071	F001806	AGG	MDAGTRQKRVEALEAIKNKAMEMAASGADSGDVRSFIGEAKINLAYELPDEEAFTKAARATLAYKRKKGASTQE
Ga0310127_007536_5262_5504	F003687	AGG	MSPASVERLLIQDARLLARRDAPVIDQEIESARQRALEIFYQWQDGMVQFQDLIPFCVVLEKKVDLNRALLKWEQEHMMD
Ga0310127_007536_8205_8489	F007026	N/A	MPYSKYPEIDWKSNEYHKLQEAVDLLKAVLEREAKRSCTCQHLVPGDDSVVEEVIAMLEERIDYDPTPNEPEEPPITLDEMHTAAWKQHQEMHR
Ga0310127_007536_876_1505	F002721	AGG	MAKDHRLDLGRYVTNPFNNQGKLRSNLDFDELFRSKPDTGEYPWNPSRFKETDLLKRMMTRKRTLNPDLNFVSNSPFFGTNTDDAVSYELFEGLGRFNRPMEYDFNEGRPITDQRPQDQPDFNPVWVEAYRLSPTMRPDKAAKNPMPRMKNPDPNGYLMSVAEQRVEDEVENKMSIAQLLDKSGVMKPVEVKKEEKEGEIIEQEVIKNT