Scaffold Ga0310127_006868

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_006868
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9250
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002985	Metagenome / Metatranscriptome	515	Y
F014001	Metagenome / Metatranscriptome	266	Y
F015201	Metagenome / Metatranscriptome	256	Y
F042290	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_006868_1_297	F014001	N/A	MSTQTQQELNTAQACIYTRTNLRRAFKDFDDTDVAGVYLRDDSCLVVRRDGSEQTYNRALIQYAFHDYTTRLKDFFAYLGPDYRGPSMWRYNSYIIYKG
Ga0310127_006868_4919_5152	F002985	N/A	MSYVIATWKEGRPYAITACPHNKQFLLIPLDSEVALNTIFSHPYRAGAQSILAWINNNDKALAGEELSIQDEARFRK
Ga0310127_006868_6301_6468	F042290	N/A	MATGPMTLTYRGCKYSQEDQAQADRAWWNVAHRPWLVLTYRNVCYFPFLTGGQIK
Ga0310127_006868_6465_6581	F015201	GGAGG	MKPALIVYLVNTKKKLARKEVESKHAIKELKKQYAATF