Scaffold Ga0310127_004458

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_004458
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12633
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006300	Metagenome	376	Y
F013882	Metagenome	267	Y
F014256	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_004458_10110_10271	F006300	AGG	MLEDWLKAFVAGSAAVLITSNYNAENALKAGIAAVLPLIYAWANTKDTRYGRK
Ga0310127_004458_4748_5095	F014256	AGGTGG	MANMFKDGYDQLVTKLQTITGLRVFDDPRNINPPCALVEAPTIMMATNVVADMEFRVVMTALGTGDNRTLDSLLDNIDLIRAAQIGLTDARPTTVSYGGADYPAYELTIRTKVSP
Ga0310127_004458_5981_6472	F013882	GAG	VAETSVTVVGVKETLRELQRMEPELAKEIKKEFKTIVDPIVKDARSKVVNLPLSGMSRNWKGGRLMPWAQSSVSKSIIARFSNRRRGNSLAVFSVTMKSPAGTIFDMAGRKAPNRLASALSQLYGAPSRLMWPSYERNADQVNENLGRVVEKINDATTNRLTR