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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034072 Open in IMG/M |
| Scaffold ID | Ga0310127_003287 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15652 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (65.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011293 | Metagenome | 292 | Y |
| F013882 | Metagenome | 267 | Y |
| F014256 | Metagenome | 264 | Y |
| F023579 | Metagenome | 209 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310127_003287_274_528 | F023579 | N/A | VAELESACLPNAIGDNGQSFGLMQIHTPSWCQPTKYWPRGYLQTQGMIDDCTELFDPLTNLWVAWHIATNYGWQNWSTYDDVLG |
| Ga0310127_003287_568_975 | F011293 | N/A | MRVLHCQNHGEEKVSSNIDPGDAAYRAWQLTKNGERMEQYGHPFTDYTMVRRIFGVLTNFKHNLTVQEAIMFMVAVKLARLMKSLDNEKMHEDSLVDAIGYLNCLHMADARDQLLDAPLHVLGDMEFWRDKPTET |
| Ga0310127_003287_7321_7668 | F014256 | AGGTGG | MSNMFKDGYDQLVAKLQTITGLRVFDDPRNMNPPCALVEAPTIMMATNVVADMEFRVVMTALGTGDNRTLDNLLDNIDLIRAAQIGLTDARPTTVSYGGADYPAYELTIRTKVSP |
| Ga0310127_003287_8554_9045 | F013882 | GAG | VAETSVTVVGVKETLRELQRMEPELAKEIKKEFKTIVDPIVKDARSKVVNLPLSGMSRNWKGGRLMPWAQSSVSKSVIARFSNRRRGNSLAVFSVTMKSPAGTIFDMAGRKAPNRLASALSQLYGAPSRLMWPSYERNADQVNQNLGRVVEKINEATTNRLTR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |