Scaffold Ga0310127_003251

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_003251
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15740
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.51%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009204	Metagenome	321	Y
F009402	Metagenome	318	Y
F045702	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_003251_3445_3768	F009402	N/A	MKKLNKEFESAGFKYKQIHREDMYAIYERCYSNNINKKHYEAIRIQSHNGIIIAGNKIAPSEFYPSNNSWGLHGYTCLTKQDAYKRLDRMMSEAAANKDKAERKKAK
Ga0310127_003251_4245_4466	F045702	N/A	MTLSETLNRTAGRFTTLVVNKGKTNSTYCARIMNATNKSVRFYDVNAEANRTVNTNNIVFARSGRIQYRKPRS
Ga0310127_003251_6934_7125	F009204	N/A	MQTKIKYYVQHIYGVPREKFIDKAQEAIFIQLTGRKTLDSVSRELIRDLSGRAVEFEQVLPPA