Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_000974 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_000974 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35498
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (73.85%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

35498

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (73.85%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027495	Metagenome	194	Y
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F056573	Metagenome	137	Y
F060870	Metagenome	132	Y
F078657	Metagenome	116	Y
F103171	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_000974_2025_2258	F027495	AGG	MKHAETHPDLDTPGCFACRISHVRMSGSAMPTRKNVQQLNAKEKQLDKDLDAYKRIRRTGGQPMKIDGSAKLEKTAD
Ga0310127_000974_2265_2549	F056573	N/A	MSTFRPPTDDFMVLGIPPKEFDSQEVRLAYSLFKHFDAEPRGRNVFLLTNGTYTENEPNDITTISKVYWGGTDNQVTADEVASLTAAGYGAYIS
Ga0310127_000974_26262_26486	F045719	AGGAG	MESATWYRLKDESWGVKVRYDGQEGDQVTVTNKKGEEKTVWLAKRVAKFDDAQLWSVSDDKPITRRETQDEEPF
Ga0310127_000974_26486_26662	F078657	GGAG	MSDNQSIFYEAWITDLQRDLDSLREDKRELLRKVAMLEQLVAEYGNKMNNLIHNRGDE
Ga0310127_000974_30475_30753	F033780	GAGG	MTPKACPWSLVAIHWTDAFDSSNGWIDMKDYKPKPCEVVSVGWLWPDILEGYVSITGSYMPDELPEMDTIGMVTHIPLGMVNKVVVLGTPEL
Ga0310127_000974_31482_31661	F103171	GGAGG	MGEQFTKMELKALSRFLRKVYPGVTEQDDLWNLIAKVEQLAKGKHARPDRRRGDSSPSA
Ga0310127_000974_31606_31893	F060870	GAG	MDGGWALVLAAVVTAVGGVIVGVLQQFKRENHDDHAYVRGVLTMLYKSQNRIETKVDRVDERLTRHLDSHASEGMLDNGRTVHQNGVESTKQVSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_000974

Overview

Ecosystem & Geography

Associated Families

Sequences