Scaffold Ga0310127_000599

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_000599
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49717
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (37.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F042808	Metagenome / Metatranscriptome	157	N
F097235	Metagenome / Metatranscriptome	104	N
F105027	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_000599_20031_20261	F105027	AGGAGG	MSSEITSTGSAEVTKRTVTIVIEDADGGFHLSLDVHPPLEGDGTQVRPTPALIAGSVARRAIQAMVEGQPQPGGEN
Ga0310127_000599_29735_31339	F028149	AGGAG	MAAGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGSWENPTGASCTGQPCDPTENKIGWGWTRNTYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGSLAGGNAFACAAGLPPINFSWVGAGYTTLRVTDNAGVAVASATIGKLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLSKTNQTLYDAWRFGVFAPAAKEFFKYGFMGYVGDFMVKVLQFPLRFNATATPGNYTLVLPYKNVTATEGIKSVFNEDYDKAQHQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCVEIISPCEADPGNPAQNYNSADPVCGVTVQFTAVPNDAGNYVIGTTGIMCDDNIVTNAGISEATPAALVAALQVVWDAEFGASSGTWSVVSGNLIQLASSAFPTTTEVVPCTNVTLEFSI
Ga0310127_000599_31412_31711	F097235	N/A	MLAASQQGKDFTMYGQMMGKRKMDGMGRMGPEVETVEFTPPKELKLEGESGTAMVDWRTTPRGTIEIIGFDGITLGESGRQDMEEDAVENEMDDMEEEA
Ga0310127_000599_42219_44258	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFLDPDQVINNGYYNRAVESAFKTGYFQGCGSYINDQGEPYLFAAISGKIFQIDIGNNFLVTDRTPVGGTFTVSTRGRASNVATYVTAAPHGLSPGMVVRLTEPVGALYPEGFFGDFVVQTIPSPTSFTTYSPGIDAGPLLGPAFTAYWLQANNPQATHVYFQQAENWLIVQDQQSAPYLYNGMVFRRAASDEVPVGGPMAYGKGRLWVARGSEYYGGDLVYGDPLYGRNSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLNYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEWGNTPISRQVVRALAYDTEFYLSAASAVNFDNRMLMTIQPQKVNGRGIVHRGVVVMDFDLVSGMGRKLPPAWEGVWTGVDILQMLTVRIQKQDRCFIFGLNQGDIGLYEVTKNGQFDFDGFDDSPIEWTIETRSLTFAEPANKKRLVSAEQWYDQVMGSIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSA