Scaffold Ga0335028_0279002

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0279002
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 999
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022649	Metagenome	213	Y
F031866	Metagenome	181	Y
F048309	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0279002_1_312	F048309	N/A	MLTIKNIDKVINMTCYGRPIYHVREFTNSVGQGAYVFEFDIHESGFGGWNAVQEVHLVRNEFDGTYGLFTMGLQVATERRIVLSEIKCLTTLLIEISEVLKTTK
Ga0335028_0279002_314_604	F022649	N/A	MLVIKNPNDITGMNFIDGRFTLRNVETYYEKYRFAFKETSRWVYVDVYRYPKWDSEQNVNMYRVDNGKFDNHWISAKYFGIIRNMKFTFTEALKDL
Ga0335028_0279002_606_974	F031866	N/A	MRKITNKSPNRLIDMEFNIPLFNAATQMYVCTDVSEIASSPGGKDYTLSLSEVKQNYSVPERITIDLFIPTTDANGEPAHVHMIEPRPKGRDVVLTKVMVTKSKLSSLGGLKKVFYNMAKSM