NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0116183

Scaffold Ga0335028_0116183


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0116183 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1737
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033349Metagenome / Metatranscriptome177N
F080819Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0116183_1293_1610F080819N/AMLHLQGLKGQSVSIDSATLRVANSYLVKGAIARQKVSQLLKVVHSDSIIISEQDSVITKQKVNIAYLNAENDSLVRQNKAISRTLSLFKSISIGLGILSVLMWLQ
Ga0335028_0116183_277_534F033349GGAGGMIEATINGWILTIGGDRYVYIDKQVDDYLLNNHFDELEPYMIKRDVYFGGCVETNLVGIETERFFYLEPDKFTVLFMLGHKTNFL
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