Scaffold Ga0335028_0103313

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0103313
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1864
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F009599	Metagenome / Metatranscriptome	315	Y
F071147	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0103313_2_226	F009599	N/A	MSVDMIKLEGLSKQDVQICKLLWNCDTLEAVDAMVKAMPPAYKNRAVVMRELMTAAQLDTVEDVHEDVTALLHTI
Ga0335028_0103313_216_407	F071147	AGGA	MTTNQSAFVFFAGLILTLGAVGGVETSVSAEQLTGSLLLAVIGLLAMYAGTLGFRNADYYDER
Ga0335028_0103313_880_1263	F000354	AGGAG	MAKVNYDAFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHIMETEFDFEDTGAGEYEAFQAGVKYALTKMNIAFEAAALDLQVCEVDLVESMGFILVRADDEPEDFVKRVLKKPVMMVDSWI