Scaffold Ga0335028_0060383

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0060383
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2548
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021979	Metagenome	216	Y
F023789	Metagenome / Metatranscriptome	208	Y
F027416	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0060383_1957_2280	F021979	AGG	MLTIENINILNSKFAGTPEWQIGEMFIGSQNYVFQIHKRVGEWTIGGVKHSELTIRLHRVKVIDRYVMETGFVKQNYHGRSAYSIDRMKTITDFTMCLDNHIKTIIR
Ga0335028_0060383_2274_2525	F027416	N/A	MVWKILRAKVFDNNSENIYSIVLTTYPDNIHRIHFYLDRELKDGQYYLTSSKSDIMRVVERQDMVDVYTFLRLIKKEIERAVC
Ga0335028_0060383_918_1112	F023789	N/A	MDTTNSHGLTQRERTELQHKIQRLQWLLKECIGIEEYELCTQIRNVIQRKYELLTTNQSHNEIE