NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0006876

Scaffold Ga0335028_0006876


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0006876 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8033
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (53.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F004255Metagenome / Metatranscriptome446Y
F024290Metagenome / Metatranscriptome206Y
F048261Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0006876_2283_2552F024290AGGAMTLEDILEEYGQEVLDTYYELFPDKNVSKFGDRCCGFVGSYDDFLEDVYHSTGSDELETIEDFANGVFLEYYYYCEKTATGFVFYNEER
Ga0335028_0006876_2940_3494F048261GGAGGMDEPLNHKLDVSKIKTLTDVKNVFECMSLISNASEGYEKYELLKQYFTIPNEPQELKLELPRKSLEEISQEFDEKIDKQIEDVEYKFAQLKYYQEYQFSKKITRIIEDIEYVRKNGSFPAKLDYSKLTATGSNITSNFIIKSGGKEVGYYTFGNGYLKYYMNKKPTAISRWFMKNCLSFVWVDT
Ga0335028_0006876_4623_4841F001881AGGMNTGETKMSDRSQEFMSFVWDQRNNQGADTEEKLVAAILSLAANYVISYNAQDGRVVLDKNDLLQLAEELKQ
Ga0335028_0006876_616_789F004255GGAGGMNEKSKIFYNIWTCAYRRRTLYKGTAREHREHETIRMCLDMKDVKFYQFDTEKPRYV

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