NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0005844

Scaffold Ga0335028_0005844


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0005844 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8742
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015600Metagenome / Metatranscriptome253Y
F063707Metagenome / Metatranscriptome129Y
F068817Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0005844_3061_3264F068817N/AMMNIKESMRMSSLDEFMKDPWKRFNEMRNTPHECDYDYRIDSSGTMFFEICKLCLDTKGVIEMDDHD
Ga0335028_0005844_7284_7463F063707AGGAMPKCLDCGNTTRFWYQELGNKLGIYNEDGSLEDVEDDYYDEVEGGTCAECDSTNIEGKL
Ga0335028_0005844_7456_7695F015600N/AMVDAGLSGTDILHGELKNLMLIAEQELTEIATEEEEGGYSDAMLSMQRTEAEGRLDALVDVYALTYQLAFAISERTKNA

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