NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0000884

Scaffold Ga0335028_0000884


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0000884 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21626
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010232Metagenome / Metatranscriptome306Y
F010612Metagenome301Y
F015719Metagenome / Metatranscriptome252Y
F056346Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0000884_15193_15366F010232AGGMTRTKEELLQIKEAFAYAMMDMLDVYDELISNTPRKLWQAPEPTVNDLIKNEEESNA
Ga0335028_0000884_15359_15544F010612AGGAGGMLEEDTPQWEHTVWIMAKVRRRTTHVDIDRAGDEALEDPSEWHVLEFDTGIKHSQEILRI
Ga0335028_0000884_18632_19084F015719AGGAGMTMYYSEVDGTEPTVSISVKDARYTLTSESLVKLIEEKDALKLELSQVERKFKSARFDVREFFQARYETDSDEIVANLDDVNSLLVSIGSEELTKSWSATVIITATITGIEAANKEAAEDIIQDSIEVNFNSDGDVWVDDISVDSVYPEA
Ga0335028_0000884_19936_20388F056346AGGAGMSSTEAPISINLKTAGGTQITLRAETADQFADMIAQGIHIITDAVTEVELAVKGTSTNKPMSVADIASSFNANITPNESGGEQTVEDKWGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAAPNWSGPKIPAELRTKPIFA

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