Scaffold Ga0335028_0000856

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0000856
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21889
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (64.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012023	Metagenome / Metatranscriptome	284	Y
F019433	Metagenome	229	Y
F054559	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0000856_2855_3028	F012023	AGG	MEQIDYEKLNERIVEQAYETAFGEMTQEQLQKLIQDKFERARKYREALEKSPTFSVN
Ga0335028_0000856_7887_8297	F054559	AGGA	MKIGFSFGRCIRDIVNGEVDYDDVAWIISGTALRDQETVKFCIQDYMYRHDYLEGLDEEKCMEVGMRLFTEGKVFQPRLQDIRAFRIPEGAVWADMFPTNMANNHSAKTAWEAYRFMLHMTVQVPEDVKENWKGRT
Ga0335028_0000856_9753_10004	F019433	N/A	MVMAKTRVGTINEVLSTRVRAVFPYRVNFNQITVAQVEEMAVWCINNCRGLWREEHFHALYFQFEDDYDAMMFMLKFGGRGNV