Scaffold Ga0335028_0000632

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0000632
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25753
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002643	Metagenome / Metatranscriptome	540	Y
F069672	Metagenome	123	Y
F085263	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0000632_10690_11079	F002643	N/A	MKFNQINTLVANLNSVIGSQESKTQKKLFRIYEKIKSHHETFQSEIEGLRLDNAQVDEKDCLILDEKGGYKFSKEGLKKLTKNIAELGEKEFDFTPISIVNPQGLEKFYFLKDWVTGVNFLKEEEEEEL
Ga0335028_0000632_3282_3716	F069672	AGGTGG	MRLIFILLFFITFESKAQYYIMVAPNVAFDTKLQDTKNLLGATVEAGRYFGNVAVGINSGWWTFDKKDFYQEAMGTFPIYQRFSVSAAIGYFYYHKDITMEYDFNYTVPIKKEYSFVLSYGAQSAFGDTFASYSIGINKDFKIK
Ga0335028_0000632_33_203	F085263	N/A	MAKSKLIDEVVQDNLELSEETVAEVKKAVAEKDAYAMPEPKKIVLYPGHTKRDFRN