Scaffold Ga0335028_0000265

Overview

Basic Information

• Taxon OID: 3300034071
• Scaffold ID: Ga0335028_0000265
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39693
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002301	Metagenome / Metatranscriptome	573	Y
F017468	Metagenome / Metatranscriptome	240	Y
F051089	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0000265_23467_24132	F002301	GGA	MAQEYITEYDALVASLAVEYHRRYPMLEVLDIQQVLWLWFLTHTRKYAEWSKLEQKDKDKLIAKSLRNAAITYCEKEKAKTIGYEVLDLYYYDATVIEAFLPSIISETYEMPSKIKDLNFKFNKSEANNDGKNWLVLRSDIATAFYRLSEAKQNILRIKFSTENNEWALIAKDLKTTPDGARMKVQRAINSLIRNLGGWRPFTDNDSPVVEEDEDEPTETH
Ga0335028_0000265_35653_35928	F051089	AGG	MATGTAGSSFTSELNRLGNSGTYPVLTSYLAATGAANQYAGTTGKALIGALNLEADSARQPKDFKALGGICNELAGTTNLSPTDALRSIDV
Ga0335028_0000265_37248_37559	F017468	AGGA	MKHWEHHPEPVEGCFGCKGLSIQMNTGDAHSQRSMPTKAFNKELDAYKEARAQGIQPAGTSMKKIQEAVKASDILGKPYDSSKMAPAKHINKKSAAVLNQLGA