NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0155796

Scaffold Ga0334990_0155796


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0155796 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1247
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022823Metagenome / Metatranscriptome212Y
F030344Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0155796_3_146F022823N/AMENVMHDIKIIEEDVENVEKKCEKVDCNAVYDVIIATIKLIYDLLFCC
Ga0334990_0155796_700_1245F030344N/ATLYINALNAGNFLGFKNNTDILISFNDTICTNPININSIIALSIGIDGDISFNNNNMESSINNSVYKASDLIFQTSVNVPKGYLIDYQNIDGGDSFKFTLGNHDRIKYFILSVYDQDGNTITDMTDYIIHIQFTVNKKSQQELLLKSLVDYNKQSYLIIGHIFDILNNIYNYFLKKLNSN
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