NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0001377

Scaffold Ga0334990_0001377


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0001377 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14135
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010316Metagenome / Metatranscriptome305Y
F022146Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0001377_10711_11031F010316N/AMRPLQLVSPTDLQPGKPYLIESTRPEFKHLNCKGTFVKNQYPEHAYQCTMTHFANVVAAGDNPYQDLRLQDTYWNYYEADAVQRAYIDQVLREITGDPSFMMHAVS
Ga0334990_0001377_2151_2786F022146N/AMDARFSCPANTACAENSQCVAADGTVVGDAVVNADAHQVAEMRDFGAGMTPTSFSICGAITGTFRLPNFCTCKDAKFGGELGCTIGLQTYITIGASAWVLPCASPANVGYRAWISIPGIATRSIGQTWTAAFTLSQPIPGASFEIGIADVGARAELSGDISRFIISTRLAIGVCARVGMGPFSKQICNPSALPWLPVPVMNGPRYDFSRFC
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