Scaffold Ga0334990_0000612

Overview

Basic Information

• Taxon OID: 3300034068
• Scaffold ID: Ga0334990_0000612
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21669
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F082235	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0000612_14317_14721	F019647	AGAAG	MKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEPQTMPVQAEQSEKPDLAALVFELSAIYSQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR
Ga0334990_0000612_15348_15938	F003786	N/A	MYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRLFSAETLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQVQMEERGRLEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYDEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0334990_0000612_20806_21522	F082235	GGA	MKWIDNLSHKYYDSCLLIGSGASLDYLPYADICNRFWIDDLIICVGDMWKDDKIKFDYCINHHTVKDLPEGYLQLWQEEIYRHPNKHILPEFDCNDERRGVTQMEGDFYKYKGMPVCESTKVYVKPIVEKIPNTLFVGGSILFDAIGLGLHLGIKKFYLMGFDGGQFQGHSYYSKYRELWPEDSYFVTGHSIRTMNSFKSLQEFLKPRGITFTHISARYGSSDLTYSNYDELDYSIVL
Ga0334990_0000612_8761_9660	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFILAVGYLPAQNNHFFAYNTMSLEKIGNKQLERCYYSEADDSYTVDTITYDMLSGINLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGVWKYKNKYYDYYDLLKFVSKYVKRNFLNKKINYGKIRRH