Scaffold Ga0334990

Basic Information
Taxon OID	3300034068 Open in IMG/M
Scaffold ID	Ga0334990_0000115 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034068 Open in IMG/M

Scaffold ID

Ga0334990_0000115 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46378
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (13.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

46378

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (13.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F070154	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334990_0000115_22463_22837	F070154	N/A	MINFKYSTRLVIILKNIVIKIPLSKRGYLQGLNEKYIWDKYKNITSLAELKWMYLGVVCQKRYDTELLRIPKMVVRRIKAKVPELDFEDCDLHNVENWGMEGKNYILLDYGINQEIANLYHEHI
Ga0334990_0000115_2540_2911	F004866	GAG	MAIVNKVDLKLQVDINETIKYQILTYCFFENILISNSDLKCLMELSKQPKVELTKFCIFLTEQGIFKSAQSARNALAKAEKKKLIVKNGVNKKTISINKTINVQIDGLVLLDYKILGRESQEA
Ga0334990_0000115_25502_26092	F002047	N/A	MWELFQMMLKNNLTPNQVLLLFGIKQGVALPQVTTEDKLALEKLGYLILDNGKYTMSAEAKCLIVHLDNYFIKAKKKTDAQLMGQDFVDKINIYREIFPNIKLPSGKPARVNVKMLSESFRWIFETYDYTWEQIIKATKMYVNEYRDAQYMYMQTSQYFICKQDKHKVKSSTLADYCDMIKDGVETEAKHFKENVI
Ga0334990_0000115_3838_4170	F005243	N/A	LFNLKKLKMANKKTNNPLDEKDPILSKEELNARREEISAFYKDNIPHLEVQAEYEMLLATIEKSRAERLQAQMFMAQAYASQKEGGQVPVDSEEAKAFKQAMENAASQID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334990_0000115

Overview

Ecosystem & Geography

Associated Families

Sequences