NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0125731

Scaffold Ga0335019_0125731


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0125731 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1704
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088769Metagenome / Metatranscriptome109Y
F097205Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0125731_261_641F097205AGGMTVSLPFQPQDSWRKLGYLYFTDSLNYREVLSQNAQWKVTELPPIGAQLQVSPSENSGGTPGGLTQGSFIFGLASGEPEQDIYPYDTEEEYTAALNRYTLQGVVDRESLNGLTFDSVAAVTGKQSV
Ga0335019_0125731_863_1702F088769N/AMLVETEEGVPVTKFPFNTPIPITSLNDYKELIRIGTSTVPDSRIPLLSYNCVSEFFQNAQVGDLRVVRVGTPNQIVELEFLPSASKINTTDLPSSLMAGNKVYVQMIINGLKLVSGDGSTGYTADGEWLGVPVTIPVSYVAGDEANNRKISAAMAAAVAEAIESNPAVNSSVYVRDTGMVNDLDPSSNSQNSYVTIAATTFDGNVSVVTEVLPVGSNFVFMQNAYNVNNIVGSQTYLERVPQDYTQCINTAFDGQQDQGYLVTPTAYAQFDAAGRSLVGA
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