Scaffold Ga0335019_0072638

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0072638
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2328
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038092	Metagenome	166	Y
F039484	Metagenome	163	N
F042325	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0072638_1375_1698	F042325	AGGA	MLTLKNIQKIEGKKIHTPHAHWVVMSIEERKHDYIIKVRFEYGTTSGAKHPKYVNFKLLRYNEFSSTLNEWKMYNDQDNGYTILTKGLLNFKMFVGMLGGQLHSFSN
Ga0335019_0072638_3_308	F039484	N/A	NGDIWFVDDVSVTMDSHGTAYIFRCTTEWPVKTSPNQQYYHSTRRIHKVVTLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMDKFILVLTDLLPNTNSL
Ga0335019_0072638_608_1054	F038092	N/A	MPIIPTPPPMTLRQKIQTIQGINNMTPQNNVVQQIRDIAEEQAKIALAELMKQETEKRKQTILTIENIDKIKGHKYSEWLTVGGVKEWDTHYEFTLLDEKGTQVETILLHRKQTSDKRYIMEYNNQTLWITKDRLSTIAGIIECMQEI