NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0004276

Scaffold Ga0335019_0004276


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0004276 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9625
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015095Metagenome / Metatranscriptome257Y
F027413Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0004276_2719_3966F027413GGAVSAWLPEWRITVGTTVYTNVLSVTMATGRDDIDLQCNAGYARMEIVNVNNTAFDIDVTDILTLELKNSSGTYVPVFGGTVSDFGISVRSPEEVGFVTIGNILAVGSLAKLTKALFPDALPKTYDGDQIYDILNELLINSWNEVAPALQWQDYNPTTTWADAENVGLGEIDQPGLYEMISRSPDPFSSYNLCAQIAQSALGNMYEDKAGRVCYADADHRTAYLSANGYTTLSANYAVPTTVKSILQIGKIRNSLVFNYGNNYNNQATALDAASIATYGRYQRSVSSNLHNLTDVEDVMDRELGLRAIPREQLQSITFRLDNPDLPDAERNKLINVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPPSLIWTGVNATLEWENAFGGLT
Ga0335019_0004276_6100_6336F015095N/AMERVQLLVGITLGSCTILGLGAGLIRHFVKYYLSELKPDGNGGHNLRGRIDHIEQRQERMDQKIDRIYEILLETRLAK
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