NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0002092

Scaffold Ga0335019_0002092


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0002092 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13177
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019119Metagenome / Metatranscriptome231N
F044374Metagenome / Metatranscriptome154Y
F060730Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0002092_10938_11204F060730N/AMGRMKEIYMQVMHENDGQVPEEMTIADIMRMKELEIYNWEQYEREQEKIRLFRIKQENPREITKVAQVREFWEEELEKGKIRRIAKGE
Ga0335019_0002092_2671_3306F044374N/AMSRKEREREFFAYHMDRFRKAQISDPFFVLKTAFFQKGKYGRQVQLFESELKRGEDVFIEFIDIIRDDSGKEQRIEPAYADRPVFRYKANPYYAEEYDMKEGTNANGDNYFAYTIPLSELMVIMPDGSEITYNLYEKRKAEAPKEQISLSVFPNFEDEFIPKLKDKTEELSLDLPSEDEGMAEITIRDFAAIMWKQPVSKKSWLNDLIKQQ
Ga0335019_0002092_8182_8601F019119N/AMEKKIMDEMLALSAEIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDEENLHMVTLSIKSFRDLRILEHGEYSKVNKAYTKIAKDYPHEILNHEVFMKTMSPANG
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