NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0000017

Scaffold Ga0335019_0000017


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0000017 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96797
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)125 (76.69%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000263Metagenome / Metatranscriptome1424Y
F000473Metagenome / Metatranscriptome1097Y
F001464Metagenome / Metatranscriptome689Y
F001781Metagenome / Metatranscriptome635Y
F002501Metagenome / Metatranscriptome553Y
F013888Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0000017_22147_22419F000263GAGGMNQEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA
Ga0335019_0000017_22409_22732F001781GGAGMKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTIQNIVSDDNWTAQATLDEMWEHLCEAVEAGQGFSLEYGAEQHQDDVLEWMLNRGYILDPLDSLDDEDEEDASDE
Ga0335019_0000017_37414_37731F000473N/AMFIDKDKNHFKHGINQWNGEPNKPVFYTKEMAQRVREINKPVFDLLMDIVMYPDFLAIRLYEDNFLQYEGTKKEMVIDYVNKVKRLIESYGVRCELEGAPSERVL
Ga0335019_0000017_51117_51776F013888GGAGMSTIGILPASGKASRVGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGDYNDTVLVGMPDTYIHGTQNNIYKEMNKVSGDLVLGVWECSEELKGRVGQVLLSGDKVISSMDKTNNCDYSNMWGTMLFRKNLIRYIDPELEHPGKQIQEWIDMSLDIRAVKPGGKYMDIGTLKGLKQLYKEME
Ga0335019_0000017_66575_67057F001464GAGMARKTRSKTRKKFLYFFLNGKIHKVLKSSRAKDELIAWSYEDKKRMLYSYTQVEKSMENAYSIKDVSALLNKHKVTIEDYILEGKIKVPARIYPIGNPDSSWSKFMFSHKDILDLHEFILEAGHSSKVPSRAEILALLKHNLILYTKTEEGKFVPVWKAE
Ga0335019_0000017_67003_67188F002501AGGMYCQKCNGRVFIDRVFSQKLHMELFCVMCGKRWMINKETSALGRWLEKQDQRHAKSFFIS
Ga0335019_0000017_92857_93369F000258GGAGGMTANYKLDASSEIRKFLWSQLLNYEIFDASDYYSDNIGKEIIPIIPVQQSAELNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTDISEINEIRNFMIDEFRRMDESARDVRNSDLVSDLFKFHNIFVADISPTSPSEEIQGFLSSDVVLEIKYSRITDNSGRFI

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