Basic Information | |
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Taxon OID | 3300034066 Open in IMG/M |
Scaffold ID | Ga0335019_0000017 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 96797 |
Total Scaffold Genes | 163 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 125 (76.69%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000258 | Metagenome / Metatranscriptome | 1443 | Y |
F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F001464 | Metagenome / Metatranscriptome | 689 | Y |
F001781 | Metagenome / Metatranscriptome | 635 | Y |
F002501 | Metagenome / Metatranscriptome | 553 | Y |
F013888 | Metagenome / Metatranscriptome | 267 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335019_0000017_22147_22419 | F000263 | GAGG | MNQEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA |
Ga0335019_0000017_22409_22732 | F001781 | GGAG | MKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTIQNIVSDDNWTAQATLDEMWEHLCEAVEAGQGFSLEYGAEQHQDDVLEWMLNRGYILDPLDSLDDEDEEDASDE |
Ga0335019_0000017_37414_37731 | F000473 | N/A | MFIDKDKNHFKHGINQWNGEPNKPVFYTKEMAQRVREINKPVFDLLMDIVMYPDFLAIRLYEDNFLQYEGTKKEMVIDYVNKVKRLIESYGVRCELEGAPSERVL |
Ga0335019_0000017_51117_51776 | F013888 | GGAG | MSTIGILPASGKASRVGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGDYNDTVLVGMPDTYIHGTQNNIYKEMNKVSGDLVLGVWECSEELKGRVGQVLLSGDKVISSMDKTNNCDYSNMWGTMLFRKNLIRYIDPELEHPGKQIQEWIDMSLDIRAVKPGGKYMDIGTLKGLKQLYKEME |
Ga0335019_0000017_66575_67057 | F001464 | GAG | MARKTRSKTRKKFLYFFLNGKIHKVLKSSRAKDELIAWSYEDKKRMLYSYTQVEKSMENAYSIKDVSALLNKHKVTIEDYILEGKIKVPARIYPIGNPDSSWSKFMFSHKDILDLHEFILEAGHSSKVPSRAEILALLKHNLILYTKTEEGKFVPVWKAE |
Ga0335019_0000017_67003_67188 | F002501 | AGG | MYCQKCNGRVFIDRVFSQKLHMELFCVMCGKRWMINKETSALGRWLEKQDQRHAKSFFIS |
Ga0335019_0000017_92857_93369 | F000258 | GGAGG | MTANYKLDASSEIRKFLWSQLLNYEIFDASDYYSDNIGKEIIPIIPVQQSAELNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTDISEINEIRNFMIDEFRRMDESARDVRNSDLVSDLFKFHNIFVADISPTSPSEEIQGFLSSDVVLEIKYSRITDNSGRFI |
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