Scaffold Ga0335001_0130443

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0130443
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1428
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F001998	Metagenome / Metatranscriptome	606	Y
F019954	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0130443_1289_1426	F019954	N/A	MSNIYKVFEHLKQLWMGIWQHIHTVTTTEVSPDLGKFAEIIDDYVW
Ga0335001_0130443_251_400	F000211	N/A	MVFEHLKQLWMGIWQHTNTVTTTEVSPDLGKFAEILDDVSVEMIPIRYG
Ga0335001_0130443_393_599	F001998	N/A	MVEAVEPFKLHPTSMSYIYKAFEHLKQLWMGIWQHPHTVTTTEVSPDLGELAEILDDVSVEMIPLRYC
Ga0335001_0130443_634_798	F000211	N/A	MSYIYMVFEHLKQLWMGIWQHTHTVTTTEVSPDLGKFAEILDDVSVKMIPIRYR
Ga0335001_0130443_833_997	F000211	N/A	MSYIYKVFEHLKQLWMGIWQHTHTVTTTEVSPDLGKFAEILDDVSVEMIPIRYR