NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0073813

Scaffold Ga0335001_0073813


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0073813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1961
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074412Metagenome119N
F094939Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0073813_1742_1960F094939GAGMVQHETGNGLYAYPRGRPGRDSSQIGEKLPCPVDLDQKLSKLRLDYGISESNKMMVFISLATKEMVQYMSMYP
Ga0335001_0073813_452_1003F074412N/AMDYASVTFISNILTLKYSKLNISNMDYTTVTDEITRLTDDLSTWSSTLCIPVNDSDTLLDISSAANGANSSVPLGAMNQPNSFPRSKGLRSVYRFDPDVFCGSSSWDDLRSMLKSAVSGCNIAVHKTIPPNSLRKKYIILGCDHSRLFQNQGSVSYSDDKVGPLYVVDEKAKRHKSFGSKRKG
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