NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0018396

Scaffold Ga0335001_0018396


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0018396 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4122
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042880Metagenome157Y
F052570Metagenome / Metatranscriptome142N
F079999Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0018396_2133_2270F079999AGGAGGMRDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGKK
Ga0335001_0018396_2499_2720F042880GAGGMSNYRTVGELIEHLKGEDLNAPIIYQYYLAEHFEISEEVFGQVAGDFDSLIPCSDSYEVISREVNSKREEVNV
Ga0335001_0018396_2713_3126F052570GGAGGMFKMKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTSDVALLTYEGREYRVVCVGEMRILYKGEIIRYCDDLIRAGIKRDKDLSKIDDNGGEWINNSWFEVIEEGSNEYTGEVYHEVKDAIETVANWIVDEELVNV
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