Scaffold Ga0335001_0011758

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0011758
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5177
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0011758_1509_1940	F010155	N/A	MLDCSNNVRVIYVNALNGNLSYNGKDVPVYGQTPFNTTPQNYVVIGNIDESSDNTNHSFGNNVEVVVDIFSEQYRVNDLGVVDSIASQILNILIPDSQVDGFDDANFEVFPIGRSSSRYLPLQDGDNYVARKIITINNLVNQK
Ga0335001_0011758_381_599	F004112	N/A	MLRGYNEKKVDNYKQTRLLMFTMVRLMGDPKTAPKTPEALWELPGDEIKKPSDEEYREVFNRLTKWQKTSEH