Scaffold Ga0335000_0130837

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335000_0130837

Scaffold Ga0335000_0130837

Overview

Basic Information
Taxon OID	3300034063 Open in IMG/M
Scaffold ID	Ga0335000_0130837 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1684
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003112	Metagenome / Metatranscriptome	506	N
F039992	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0130837_1123_1374	F039992	GGAGG	VSLDEVHDLRAKIEDVDRRLIRIEERQVTLYKMIETALASFGDLANRVTALEHLKTKMLLVAGAVGAIVSLAWDALKARFSGG
Ga0335000_0130837_852_1133	F003112	GGAG	MWKRLATWLTSLSLRLLMTRAEFACFQEALKFATENNLMAKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTEAVVHLAVALKYLEGRGRES

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