Scaffold Ga0335000_0118115

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0118115
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016800	Metagenome / Metatranscriptome	244	Y
F049575	Metagenome / Metatranscriptome	146	Y
F072267	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0118115_1015_1299	F016800	AGGA	MFDAFTDYPIPSYGDVAGEKAPIRRAKILTYDGNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIPFTYAELETLPLTEISSPHSI
Ga0335000_0118115_106_642	F072267	N/A	MTEKIGYKLNPKKLKGAPQGILPYVVGAFYYTEDFEYFDVIKPYLDIPEKPKTLDEITQEFDEKIDKLIETTKEKFECSKYFAGKRYNQKFDKIIENFEYARKNECFPQKLTLDYSKFCATGSSVETSFVIKQGNNHEGYYTIGNGYLRFYMPTKPNAITRWFMNKCLSIRWVDEKND
Ga0335000_0118115_626_838	F049575	N/A	MRKMTKLSAADLMVIHNTLYKSLSVVGNSIWTQETRERVMDKVSIIMEQMNAEVVCGDVEPIVVSGDLGG