Scaffold Ga0335000_0002572

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0002572
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15160
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008358	Metagenome / Metatranscriptome	334	Y
F024290	Metagenome / Metatranscriptome	206	Y
F072267	Metagenome / Metatranscriptome	121	Y
F077003	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0002572_11316_11480	F077003	AGGAG	MVALLLTTTISCTQALSVVHRLVSVVGLTEVQKSEIIQEIRKVIPSCPIKVVKQ
Ga0335000_0002572_11647_11886	F008358	N/A	MSASYVYFIIFFCIAYLIVTDQSVARGFYMLTQLARVQYEKTKWWILHNPANPIVKYFMWRRAYKLAKELQEELESRNK
Ga0335000_0002572_13493_13762	F024290	N/A	MNLEDILEEYGQEVLDTYYELFPDKSISKFPDRFCGFVGDYTDFLLNSYYSTGSDNLESIKDFENGVFQEYYYYCHNTNTGFVFYNEDR
Ga0335000_0002572_14335_14862	F072267	N/A	MTERIGYKLNPNKLKGAPQIILPYVVGAFYYTEDFEYFDVIKPYLDIPEPPKSLEEIQQECEEKFDDLIERTKNSFYKSKYIAETLYETKFNRIIENFEYAKEHGQFPQKSILTYSTPLGVNGIASSFIIKQGNKHEGYYTIGNGYLRFYMPYKPNAITRWFMDKCLSIRWVDEK