Scaffold Ga0335000

Basic Information
Taxon OID	3300034063 Open in IMG/M
Scaffold ID	Ga0335000_0000670 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034063 Open in IMG/M

Scaffold ID

Ga0335000_0000670 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29442
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (44.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29442

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (44.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014837	Metagenome / Metatranscriptome	259	Y
F023295	Metagenome / Metatranscriptome	210	Y
F030057	Metagenome / Metatranscriptome	186	Y
F048257	Metagenome	148	N
F067530	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0000670_11468_11884	F048257	GGAGG	VTSFPSSESARKCLRGEGCADSVYWVIRRTLLLNSGLRLAGEKEHLWRKSLYGSLAVQAFVMAWTAAHMKDPVASLPSGEVAVKGDVMGILGTYLARSAIVGTGLWLGGERKNLLRNTLISTAMIQATVLLWAKDHEV
Ga0335000_0000670_13211_13462	F023295	N/A	VKLLRQAYNKAKLLLISKRSLVLLSMLQSVGCATRVILVPDGQPVMLAEPVKAKVYAFDSAGNLVPSSNRILLPAGWYALPRK
Ga0335000_0000670_14482_14682	F067530	N/A	MNQILTLNLDPATANALITALEVARRHGDFPVARTAVTIISELIRQDEEFKAKQAKPAPVTSQTAE
Ga0335000_0000670_17015_17512	F014837	AGG	MIERNINPKPRFVTLTASVPSTGAFVGVPLATLWRASFFRFPQDSIVHYISINSTFLANGAASQVIGAVAYGQGQDNIGFNLGAGIDNTSEEILWRDEILNPAAGIITDSKSTQIMMNEFFVHTGTGIGVYVNGLSGNANINATISFNPIAEWVNFREPTIGARI
Ga0335000_0000670_25185_25556	F030057	N/A	MAVAYNLKKTLGGSLWKWVDGEEKVFTVVGPIRAGRTVANPRSGIAKAPDIMTVRDAADGNEKDILVGAVLRSSLTENYPDDSYIGLTFSCTQGPVQKGTRYKTMAVSEVELDEPTPAKKAKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335000_0000670

Overview

Ecosystem & Geography

Associated Families

Sequences