NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0218118

Scaffold Ga0334995_0218118


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0218118 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1311
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022882Metagenome / Metatranscriptome212N
F035763Metagenome / Metatranscriptome171N
F038230Metagenome166N
F041020Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0218118_1012_1311F022882N/AMSNLTKYQPRNSDEQAIISARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRLFSAETLELDDDVKFYGKA
Ga0334995_0218118_2_580F035763N/AKSTVTNKDFEQRKNNTNKDFNKGCEFENPLPETKIKNSFTRQSILDSISHEQGFKEKEKTFAPQKEKESREPSETYLCFTAFASTYERLAGVTYPSDKNNYIMTAKDGANCKKLVTWLKKVSASEQAPDEMVTMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFMYNNPAAQMKRRQEEIDRLVNEFQP
Ga0334995_0218118_577_816F041020N/AMKQTPKEKAKELFDHYYILIQNIGGELGQEILVSILAEQCALFFASQMQAEKWSQKKYKAYEYWHEVEVELVNYANFKL
Ga0334995_0218118_813_1019F038230N/AMTKQDRNAYMREYMKKYRATMNEYTYKKIRERENHRLRAKYHAMSREERQKYIEYQRSYHKLKQFTNE
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