NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0183884

Scaffold Ga0334995_0183884


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0183884 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1471
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014589Metagenome261Y
F102704Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0183884_1_132F014589GAGGMQNNDKHILAQWAKNLLNDDFFKEVIDNLKKEQISVIINTSAEE
Ga0334995_0183884_122_1195F102704N/AMNYQELRSLVGGSNPQDASYQDIVSGIQSQYRPQTQFAPTTSLLDMIGNQLPDQPRIAYGSLLQALPRVLPTPMTPVKNTDAAASVDSGVINLGNLDTGKITGNTAIDNTLVYNNDFTKNTGGVNTSNVDKGLFGTNVTGTDIANVAGTVAPIAALAGNSDLVKTAIALNLIGSAADLKTDQDVINLGTKIAMLAAGPAGNVLAAGLGIASDNTPLTVNALLGLTNPTLSLVNSIAGNLTGYSLGDIVNGLLNAPEGSVSEYGLLGAANLANTADASRRRAGAAYDSMDANTLRVLAELGDQEAIATIRSMSSGGTSTYNPINDLGTARGNSYFNLFTPVGGVAKPNPTITRAILAE
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