Scaffold Ga0334995_0169384

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0169384
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1555
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024037	Metagenome / Metatranscriptome	207	Y
F028727	Metagenome / Metatranscriptome	190	Y
F104553	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0169384_1153_1422	F024037	N/A	MYLIREKRPEFVHLNSKGVFVKNEYPTSPHQCTMSHFTNVQSNNNTNHIDLRLQDVYWNYYEADAVERAYTTQALRVITGDPDFIFDDY
Ga0334995_0169384_3_665	F104553	GAG	MKKDELKAICKELKIKGITGKTKDELIKMIEQRDATPVSVAPNNEAKTNVKRKTNVKEKQNMKYSVSREDAEKSATEWIGSSPSLMREWLVCAIMDPKQHREIGKVLAYVSEIHVNKWLSEQSGRPVKNVTGEPWDGITDDDGKVVRNQIKFRMDAWHFETTRRNSAKNAETNGTGHVAYRKDEFDVVAIFKPSPTFGITGSTIRCIPVSALINPEKPDQL
Ga0334995_0169384_845_1087	F028727	N/A	MKTVFIVITFITFIIFFMEALIHFNIGKNGEHKPHEYIQVTDQIKIHIPDKDEFLKIVKTVLFFSCVSGLLSAYIIKRHM