NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0139175

Scaffold Ga0334995_0139175


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0139175 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1770
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042733Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0139175_2_553F042733N/AMNSHVEKRTQFSDIPYDIMHNCISKYLLEDKQINKIFNEKDDYYLQMLLLGEIKKLPYIIRCDTNTYKIQNDVLKAYINRTLRGFKIDEEVHSIIVNFDFHPHECELNFNHMWIEFENENDKLICKLYRSAFNKSNYILQFYESDYDYQFYRAKVRKAEIKAIFNDLQERTNMKIYDYIEELEN
Ga0334995_0139175_651_1256F042733N/AMSNIDFKISASNQTTIFDLPNDIMHNCISKYLLEDKQINKIFNEKDDYYLQMHLFGEIKNLPYIISCETNTYKVQNDVLKAYVNRILRGFKINEEVHSIIVNFDFHPHECVIDYNEMWIEFKNESDELICRLYRSVSNKSNYILKFCEVDYDYQYYHAKVRKAEIKAIFNDLQERTNMKIIDYFKELEKELEEELEMNFRF
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