Scaffold Ga0334995_0087359

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0087359
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2404
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031363	Metagenome	182	Y
F045580	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0087359_1176_1535	F031363	AGGA	MNPSEYDGFYFLPGDEDNELCFSFFEFDGKLAGSKKVDSHNPIGDVWHIAFFTKDEEGEPVFDDSFEAIFANPEVYVKNLCGLGLYGCVLRKTDKSVKWFNDYLNKVKNRVTIMKLKSN
Ga0334995_0087359_2035_2226	F045580	AGGAG	MMSKISLLLIVLFVAVVFGPLLTIWSLNTLFPVLAIPYSIETWLATAVIAGIFRGDGISFKGK