NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0087359

Scaffold Ga0334995_0087359


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0087359 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2404
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031363Metagenome182Y
F045580Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0087359_1176_1535F031363AGGAMNPSEYDGFYFLPGDEDNELCFSFFEFDGKLAGSKKVDSHNPIGDVWHIAFFTKDEEGEPVFDDSFEAIFANPEVYVKNLCGLGLYGCVLRKTDKSVKWFNDYLNKVKNRVTIMKLKSN
Ga0334995_0087359_2035_2226F045580AGGAGMMSKISLLLIVLFVAVVFGPLLTIWSLNTLFPVLAIPYSIETWLATAVIAGIFRGDGISFKGK

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