Scaffold Ga0334995_0043649

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0043649
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3724
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017469	Metagenome / Metatranscriptome	240	Y
F036551	Metagenome	169	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0043649_162_296	F017469	GAGG	MKTICKFCGWEIKKPEWYNEYQGSYACDDCMMDQAIEREKERAN
Ga0334995_0043649_293_499	F036551	GGAGG	MNEILETLLSNEIRVCELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILVSEEGKV
Ga0334995_0043649_913_1053	F072283	N/A	MQDLINAIKPILPNALIIDTDSGILIETGLELGLGGLLQTIEGEEA