Scaffold Ga0334995_0040647

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334995_0040647

Scaffold Ga0334995_0040647

Overview

Basic Information
Taxon OID	3300034062 Open in IMG/M
Scaffold ID	Ga0334995_0040647 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3893
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F030425	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0040647_2514_3761	F000468	GGA	MSDFTPDWKLTVGGVDYTNITISDVQHQAGRSDIYQQALPSYMQVTLVALNNQTLPFDINDSFDLQVKDSAGSYVSLFGGDLTDVTVGVLQTGAAATVVQYTLLAMGSLARLTKEIFNDNISQDEDGNQIYEILSSVLLGTWNDVPAASQWSTYNATETWANAVNLGLGEIDQPGLYTMSSQSNVTDTIYNVISDIATSAFGYIYEDNTGNIGYADADHRQNYLLNNGYVELDARHALGAGLSTIMRSADVRNDIYLNYGSNYNSQVDATDAASIALYGYKAETINSRVHGTVDAQAIADRYIAQRAYPIPAFQSITFPITNSEIDNADRDDLLAVFMGMPVHIQNLPNQISGGDFEGYVEGWSWSTRFNELFLTINVSPVAFSQVAMRWNTTPATEAWNTIDPSLTWEYATIIS
Ga0334995_0040647_3774_3893	F030425	AGGA	MATTTNYSWSTPDDTALVKDGAAAIRSLGTAIDSTVFTNA

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