Basic Information | |
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Taxon OID | 3300034062 Open in IMG/M |
Scaffold ID | Ga0334995_0036207 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4183 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003267 | Metagenome / Metatranscriptome | 496 | N |
F007111 | Metagenome / Metatranscriptome | 357 | N |
F008996 | Metagenome | 324 | N |
F052549 | Metagenome | 142 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334995_0036207_2808_3455 | F007111 | AGG | METTILANGQPVGKFGSGSMKGIDQTALEGIGSIVGPKGGGKSPAHDVLVKWIERVIELAKKNLEAANANAGGTLSASITPEDIELSAKQIVVAIMANPYWKYVDQGVRGKTSSVKAPRSPFQYKDNYPPAQAMADWIANKEKAVVPTYSRKLKRMRTKQEQGLVDGRSVAYWVFQRGTRATNFMSNALSPEMIDVLVNTIAETLGKSISVATKL |
Ga0334995_0036207_3457_4182 | F052549 | N/A | MAVTVLSGSPQVATPVYNKMIFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVAKVVETLIAPIKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTVSGNVSFAGNLEQLELATWSGGLYFPSGAIVNDTTRMLTTPTTRTVYADGYGWLSIGQFNYAVEKAYIQYWSATGATFARQFDVLASSVSGSNVIRFGVGPMNLKALTSGQCLDGNPGDYLFQGN |
Ga0334995_0036207_770_1504 | F008996 | N/A | MKLLANIAYHHNPERLPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLADQPVTVHAHTQLSHPWMLTAVHRTRIKETYKYFDWVAYFEDDMMLPKEGFVNFTERFDSMFEDGLYPSFTRIETYDDKEGECTPDVNEVLPSSVWCQYNGKDYVSLPFFINYHAFWMFSVKRLKEVLTRNPGELDHIPNNGLYRESLASFPIWSLNLKPMLEFTEQGELAEHCKVFHLTNNYKHGSTNIKTLFKR |
Ga0334995_0036207_91_768 | F003267 | N/A | MMVFGWISMKVIHYYHIYCGGNWQLILNQHMMAVCNYGLIGVLDEIRVGIVGPPEQRKAVKEVLEGSMVADKVKVVVTRTNAWEQATLTEMYRASQEEEAVYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERCLQLLEGVDAVGCHWITKEQFPHMADANNPEGYPYFGGNFWWAKSSHIKELGEPARDHRFRSETWVGKKPDTKVFDSNPGWPSPEKFVVTF |
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