Scaffold Ga0334995_0025729

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334995_0025729

Scaffold Ga0334995_0025729

Overview

Basic Information
Taxon OID	3300034062 Open in IMG/M
Scaffold ID	Ga0334995_0025729 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5150
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082389	Metagenome	113	Y
F100413	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0025729_2162_3004	F100413	N/A	MDGLTLKRTPDAIKWIQDSLAESNIDYVLKHGTYTTQIQHSMGTIKLMLNNFQNRVFCASQMVKKDCKNSENGQEIMKATHYKKNYDANPKIESIKYDTCLNIDLSSAYAYCLFNSGLITKKTFNYLLKLPKMERLTSVGMLATSHVKYFYSGGKCVDFQPYREPTAQIFFYLIDEINYLMQDIKWMLGNDFIFYWVDGVFMKPTTPKSKIEKVENLLISLGYKYKYEKVENFSVNRIQDKVIIDMIKNDESKRYEFSTGASGRELGKHIAKKAMQDLQN
Ga0334995_0025729_4877_5104	F082389	N/A	MSIVKRKNVSGGTYYFNTTTKKFASEAAYKKSKSAPIAKFKARKGKPSEGTCSIFGRELKVQKTSSAGRGLRKCR

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