NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0005580

Scaffold Ga0334995_0005580


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0005580 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12519
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F027413Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0005580_1610_2221F007029GAGMGFLDNYEDVNARIKRFRAEFPSGRLCATIEHLDIQAGTVLVRAEAYREYEDEKPSAVDYAFGNVATYPNNMKKWFIEDTLTSSYGRVIGLLTPSLEFNSRPTVQDMQKVETLPADPDPWSKKAAIEDMPTMASAIGEIEQSLGGAQVAAAPRCSHGTMIWKQAAAGSPKNWGGYFCTERTKATQCAPNWHVLGSDGKWKPQV
Ga0334995_0005580_5166_6341F027413GAGMATGRDDIDLQCNAGYARMEIVNIDNTAFDIDVTDSLTLELKNSAGVYVPVFGGEVSDFGISVRSPEETGFVTIGNILAVGSLAKLTKALFPDALPKTEDGTQIYDILNELLINSWFEVAPALQWAVYNPTTTWADAENVGLGEIDQPGLYEMIARSADPFSSYNLCAQIAQSALGNMYEDKAGRVCYADADHRTAYLSANGYTSISANYATPSSVKSILQIGKIRNSLVFNYGNNYNNQATALDATSIANYGRYQRSVSSNLHNLSDVEDVMERELGLRAIPREQLQAITFRLDNSDMPDAERNKLINVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPPSLIWTGVNATLEWENAFGGLT
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