Scaffold Ga0334995_0000288

Overview

Basic Information

• Taxon OID: 3300034062
• Scaffold ID: Ga0334995_0000288
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55149
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (89.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048932	Metagenome	147	Y
F074585	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334995_0000288_28325_28588	F048932	AGGAG	MDYPNRGTLWTNDYKKTDTQPDMKGDIKLELDLVRDMLENADTDHIVIKLGAWLGKHTDGKRKITLKLDTFKKEAPAASSAKDPWDD
Ga0334995_0000288_41309_41524	F074585	AGG	MTNQKQIRAAFWEAFPDLPRRRYRYSPNRSDKTAQLVYPIDTRCAFVDFVDYLQRAGVISEALADRATLEA