NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0000288

Scaffold Ga0334995_0000288


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0000288 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55149
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (89.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048932Metagenome147Y
F074585Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0000288_28325_28588F048932AGGAGMDYPNRGTLWTNDYKKTDTQPDMKGDIKLELDLVRDMLENADTDHIVIKLGAWLGKHTDGKRKITLKLDTFKKEAPAASSAKDPWDD
Ga0334995_0000288_41309_41524F074585AGGMTNQKQIRAAFWEAFPDLPRRRYRYSPNRSDKTAQLVYPIDTRCAFVDFVDYLQRAGVISEALADRATLEA

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