Scaffold Ga0334987_0238161

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0238161
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1249
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017987	Metagenome	237	Y
F045692	Metagenome / Metatranscriptome	152	Y
F053230	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0238161_1091_1249	F045692	N/A	MTQLTQAKLKDLNILKLYEHYGALERSLPLLTPESQELAQAELEACASLRSEK
Ga0334987_0238161_2_214	F017987	N/A	PVDHISEGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQTHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK
Ga0334987_0238161_968_1087	F053230	N/A	MFEAIASFVLPVLKDILWTAAAALLAYALNKFQSHLQNI